3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05615

Details:

PFam ID : PF05615

PFam Domain Description : Tho complex subunit 7

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 114

Average sequence length: 141.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05615	D7G415_ECTSI_20_152	55.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05615	Q01GY3_OSTTA_7_156	93.8

Sequence based PCA Plot of the family - PF05615 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay