3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05614

Details:

PFam ID : PF05614

PFam Domain Description : Circovirus protein of unknown function (DUF782)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 69.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05614	B3RUM3_TRIAD_6_380	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05614	Q9YR14_PCV2_1_104	100

Sequence based PCA Plot of the family - PF05614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=28
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay