3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05612

Details:

PFam ID : PF05612

PFam Domain Description : Mouse protein of unknown function (DUF781)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 27

Average sequence length: 305.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05612	B3RUM3_TRIAD_6_380	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05612	B3RUM3_TRIAD_6_380	100

Sequence based PCA Plot of the family - PF05612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=188 Length=8
Motif2 Start=55 Length=8
Motif3 Start=24 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay