3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05609

Details:

PFam ID : PF05609

PFam Domain Description : Lamina-associated polypeptide 1C (LAP1C)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 42

Average sequence length: 269.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05609	TOIP1_HUMAN_122_583	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05609	Q2YDM4_BOVIN_123_224	95.1

Sequence based PCA Plot of the family - PF05609 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay