3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05605

Details:

PFam ID : PF05605

PFam Domain Description : Drought induced 19 protein (Di19)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 150

Average sequence length: 154.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05605	B0WCU0_CULQU_53_124	82.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05605	C0PC01_MAIZE_213_251	99.3

Sequence based PCA Plot of the family - PF05605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=140 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay