3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05602

Details:

PFam ID : PF05602

PFam Domain Description : Cleft lip and palate transmembrane protein 1 (CLPTM1)

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 217

Average sequence length: 352.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05602	Q4UIZ6_THEAN_481_552	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05602	Q4SPJ1_TETNG_54_164	100

Sequence based PCA Plot of the family - PF05602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=181 Length=8
Motif3 Start=26 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay