3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05599

Details:

PFam ID : PF05599

PFam Domain Description : Deltaretrovirus Tax protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 12

Average sequence length: 46.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05599	Q80824_HTLV2_1_49	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05599	Q9QNL6_9STL1_1_39	100

Sequence based PCA Plot of the family - PF05599 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=43

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay