3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05596

Details:

PFam ID : PF05596

PFam Domain Description : Taeniidae antigen

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 59

Average sequence length: 58.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05596	C3VX28_ECHGR_3_39	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05596	Q9GPP5_MONEX_3_67	98.2

Sequence based PCA Plot of the family - PF05596 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay