3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05595

Details:

PFam ID : PF05595

PFam Domain Description : Domain of unknown function (DUF771)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 88

Average sequence length: 84.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05595	F0PN54_BACT0_4_90	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05595	B9E7T1_MACCJ_12_98	100

Sequence based PCA Plot of the family - PF05595 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay