3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05594 Details: PFam ID : PF05594 PFam Domain Description : Haemagluttinin repeat Number of Sequence in 50% Dataset : 1032 Number of Sequence in Full Dataset : 2822 Average sequence length: 74.8 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05594A0Q3Y8_FRATN_3_161No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF05594C8NAG4_9GAMM_739_92390.4 Sequence based PCA Plot of the family - PF05594 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=19 Length=8Motif2 Start=10 Length=8Motif3 Start=1 Length=8Motif4 Start=31 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF05594
PFam Domain Description : Haemagluttinin repeat
Number of Sequence in 50% Dataset : 1032
Number of Sequence in Full Dataset : 2822
Average sequence length: 74.8
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER