3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05592

Details:

PFam ID : PF05592

PFam Domain Description : Bacterial alpha-L-rhamnosidase

Number of Sequence in 50% Dataset : 251

Number of Sequence in Full Dataset : 643

Average sequence length: 453.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05592	A0Q3Y8_FRATN_3_161	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05592	F0Z223_9CLOT_320_891	100

Sequence based PCA Plot of the family - PF05592 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay