3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05590

Details:

PFam ID : PF05590

PFam Domain Description : Xylella fastidiosa protein of unknown function (DUF769)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 41

Average sequence length: 205.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05590	D8P505_RALSO_25_270	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05590	Q3RC23_XYLFA_25_280	52

Sequence based PCA Plot of the family - PF05590 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=14
Motif2 Start=27 Length=8
Motif3 Start=1 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay