3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05588

Details:

PFam ID : PF05588

PFam Domain Description : Clostridium botulinum HA-17 protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 8

Average sequence length: 105.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05588	F1M9H7_RAT_95_200	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05588	Q799J1_CLOBO_10_128	100

Sequence based PCA Plot of the family - PF05588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay