3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05587

Details:

PFam ID : PF05587

PFam Domain Description : Anthrax receptor extracellular domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 32

Average sequence length: 99.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05587	F1M9H7_RAT_95_200	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05587	F1M9H7_RAT_95_200	100

Sequence based PCA Plot of the family - PF05587 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay