3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05582

Details:

PFam ID : PF05582

PFam Domain Description : YabG peptidase U57

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 82

Average sequence length: 247.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05582	B0A6L2_9CLOT_1_85	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05582	F2JM29_9FIRM_2_297	100

Sequence based PCA Plot of the family - PF05582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=2 Length=20
Motif3 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay