3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05573

Details:

PFam ID : PF05573

PFam Domain Description : NosL

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 315

Average sequence length: 136.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05573	A6GLH5_9BURK_358_482	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05573	D3T020_NATMM_35_200	100

Sequence based PCA Plot of the family - PF05573 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=33
Motif2 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay