3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05570

Details:

PFam ID : PF05570

PFam Domain Description : Circovirus protein of unknown function (DUF765)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 19.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05570	O91863_PCV2_1_29	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05570	O91863_PCV2_1_29	100

Sequence based PCA Plot of the family - PF05570 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay