3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05567

Details:

PFam ID : PF05567

PFam Domain Description : Neisseria PilC beta-propeller domain

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 321

Average sequence length: 326.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05567	Q1DFD7_MYXXD_1014_1276	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05567	Q21HL1_SACD2_1107_1517	100

Sequence based PCA Plot of the family - PF05567 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=135 Length=8
Motif2 Start=87 Length=11
Motif3 Start=186 Length=8
Motif4 Start=21 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay