3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05564

Details:

PFam ID : PF05564

PFam Domain Description : Dormancy/auxin associated protein

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 101

Average sequence length: 107.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05564	B6SPX5_MAIZE_7_66	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05564	A9RW68_PHYPA_7_163	100

Sequence based PCA Plot of the family - PF05564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay