3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05562

Details:

PFam ID : PF05562

PFam Domain Description : Cold acclimation protein WCOR413

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 67

Average sequence length: 165.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05562	B3H4D1_ARATH_1_133	8.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05562	B9HEM4_POPTR_6_145	100

Sequence based PCA Plot of the family - PF05562 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay