3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05557

Details:

PFam ID : PF05557

PFam Domain Description : Mitotic checkpoint protein

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 167

Average sequence length: 477.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05557	MAD1_ASHGO_3_654	68.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05557	B7QP23_IXOSC_7_505	100

Sequence based PCA Plot of the family - PF05557 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=523 Length=8
Motif4 Start=675 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay