3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05554

Details:

PFam ID : PF05554

PFam Domain Description : Viral hemorrhagic septicemia virus non-virion protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 6

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05554	E5GC50_CUCME_38_56	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05554	Q1AES2_9RHAB_1_122	100

Sequence based PCA Plot of the family - PF05554 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay