3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05553

Details:

PFam ID : PF05553

PFam Domain Description : Cotton fibre expressed protein

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 268

Average sequence length: 34.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05553	E5GC50_CUCME_38_56	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05553	B9SQF7_RICCO_275_320	100

Sequence based PCA Plot of the family - PF05553 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay