3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05552

Details:

PFam ID : PF05552

PFam Domain Description : Conserved TM helix

Number of Sequence in 50% Dataset : 139

Number of Sequence in Full Dataset : 619

Average sequence length: 52.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05552	A7BJ62_NAEGR_105_201	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05552	A8UPN4_9FLAO_107_187	100

Sequence based PCA Plot of the family - PF05552 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay