3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05549

Details:

PFam ID : PF05549

PFam Domain Description : Allexivirus 40kDa protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 12

Average sequence length: 219.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05549	D7PQV1_9VIRU_195_314	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05549	O55604_9VIRU_101_367	90.9

Sequence based PCA Plot of the family - PF05549 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=107 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay