3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05548

Details:

PFam ID : PF05548

PFam Domain Description : Gametolysin peptidase M11

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 185

Average sequence length: 250.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05548	A8JDK8_CHLRE_237_391	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05548	D8TTF0_VOLCA_368_691	100

Sequence based PCA Plot of the family - PF05548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=214 Length=14
Motif3 Start=182 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay