3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05547

Details:

PFam ID : PF05547

PFam Domain Description : Immune inhibitor A peptidase M6

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 313

Average sequence length: 353.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05547	C5BIL0_TERTT_244_491	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05547	D9UZ37_9ACTO_461_651	100

Sequence based PCA Plot of the family - PF05547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=259 Length=8
Motif4 Start=112 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay