3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05545

Details:

PFam ID : PF05545

PFam Domain Description : FKBP-type peptidyl-prolyl cis-trans isomerase

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 331

Average sequence length: 46.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05545	B5JND7_9BACT_1_51	35.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05545	Q9Z9H9_MAGMG_1_31	96.9

Sequence based PCA Plot of the family - PF05545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay