3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05536

Details:

PFam ID : PF05536

PFam Domain Description : Neurochondrin

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 93

Average sequence length: 354.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05536	A4SBD2_OSTLU_20_166	52.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05536	E9C950_9EUKA_208_380	93.4

Sequence based PCA Plot of the family - PF05536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay