3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05535

Details:

PFam ID : PF05535

PFam Domain Description : Chromadorea ALT protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 24

Average sequence length: 73.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05535	A8QFK0_BRUMA_1_37	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05535	E3MB38_CAERE_48_130	100

Sequence based PCA Plot of the family - PF05535 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay