3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05533

Details:

PFam ID : PF05533

PFam Domain Description : Beet yellows virus-type papain-like endopeptidase C42

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 23

Average sequence length: 83

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05533	Q6PXG1_9CLOS_201_263	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05533	Q5G7G7_9CLOS_451_544	100

Sequence based PCA Plot of the family - PF05533 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=70 Length=8
Motif2 Start=2 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay