3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05532

Details:

PFam ID : PF05532

PFam Domain Description : CsbD-like

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 762

Average sequence length: 53.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05532	A5IZR5_9BBAC_8_95	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05532	A3ZNV1_9PLAN_89_141	99.6

Sequence based PCA Plot of the family - PF05532 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=8
Motif2 Start=31 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay