3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05525

Details:

PFam ID : PF05525

PFam Domain Description : Branched-chain amino acid transport protein

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 616

Average sequence length: 402.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05525	D2FHA2_STAAU_1_101	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05525	D6ZKU8_MOBCV_10_452	100

Sequence based PCA Plot of the family - PF05525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay