3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05523

Details:

PFam ID : PF05523

PFam Domain Description : WxcM-like, C-terminal

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 305

Average sequence length: 124.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05523	A9A1S4_NITMS_1_143	83.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05523	E8LAQ1_9RHIZ_4_98	100

Sequence based PCA Plot of the family - PF05523 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=126 Length=8
Motif3 Start=22 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay