3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05522

Details:

PFam ID : PF05522

PFam Domain Description : Metallothionein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 17

Average sequence length: 62.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05522	D1MJA3_EISFO_1_38	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05522	Q70LQ4_ENCBU_66_115	100

Sequence based PCA Plot of the family - PF05522 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay