3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05518

Details:

PFam ID : PF05518

PFam Domain Description : Totivirus coat protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 19

Average sequence length: 597.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05518	A9UIB3_9VIRU_1_397	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05518	CAPSD_LRVLG_17_741	100

Sequence based PCA Plot of the family - PF05518 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=289 Length=8
Motif3 Start=13 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay