3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05517

Details:

PFam ID : PF05517

PFam Domain Description : p25-alpha

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 170

Average sequence length: 121.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05517	D8UBF8_VOLCA_8_120	45.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05517	Q5DEP2_SCHJA_6_165	97.6

Sequence based PCA Plot of the family - PF05517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=119 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay