3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05515

Details:

PFam ID : PF05515

PFam Domain Description : Viral nucleic acid binding

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 57

Average sequence length: 102.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05515	A8II70_9VIRU_1_129	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05515	B5ABX5_SHVX_1_25	100

Sequence based PCA Plot of the family - PF05515 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=1 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay