3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05514

Details:

PFam ID : PF05514

PFam Domain Description : HR-like lesion-inducing

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 54

Average sequence length: 128.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05514	D2RV59_HALTV_84_150	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05514	D6V624_9BRAD_1_135	100

Sequence based PCA Plot of the family - PF05514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay