3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05512

Details:

PFam ID : PF05512

PFam Domain Description : AWPM-19-like family

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 74

Average sequence length: 123.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05512	B6UHQ3_MAIZE_20_162	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05512	B6UHQ3_MAIZE_20_162	98.6

Sequence based PCA Plot of the family - PF05512 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay