3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05507

Details:

PFam ID : PF05507

PFam Domain Description : Microfibril-associated glycoprotein (MAGP)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 26

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05507	D3YW93_MOUSE_31_69	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05507	D3Z3L7_MOUSE_2_117	96

Sequence based PCA Plot of the family - PF05507 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay