3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05506

Details:

PFam ID : PF05506

PFam Domain Description : Domain of unknown function (DUF756)

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 425

Average sequence length: 88.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05506	NCAP_EBOSU_19_734	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05506	Q82CI3_STRAW_263_398	100

Sequence based PCA Plot of the family - PF05506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=21
Motif2 Start=148 Length=8
Motif3 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay