3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05501

Details:

PFam ID : PF05501

PFam Domain Description : Domain of unknown function (DUF755)

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 73

Average sequence length: 122.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05501	Q537Y3_9VIRU_1_79	16.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05501	ORF23_TTVV2_125_272	100

Sequence based PCA Plot of the family - PF05501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay