3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05496

Details:

PFam ID : PF05496

PFam Domain Description : Holliday junction DNA helicase ruvB N-terminus

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 1390

Average sequence length: 199.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05496	A4NW27_HAEIF_6_71	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05496	D6K825_9ACTO_1372_1463	100

Sequence based PCA Plot of the family - PF05496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=184 Length=28
Motif2 Start=33 Length=23
Motif3 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay