3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05495

Details:

PFam ID : PF05495

PFam Domain Description : CHY zinc finger

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 369

Average sequence length: 74.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05495	B7XQH2_ENTBH_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05495	A8I5U8_CHLRE_158_193	99.1

Sequence based PCA Plot of the family - PF05495 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=21 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay