3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05494

Details:

PFam ID : PF05494

PFam Domain Description : Toluene tolerance, Ttg2

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 491

Average sequence length: 166.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05494	B7XQH2_ENTBH_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05494	Q72PX6_LEPIC_62_216	100

Sequence based PCA Plot of the family - PF05494 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=173 Length=8
Motif3 Start=151 Length=11
Motif4 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay