3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05493

Details:

PFam ID : PF05493

PFam Domain Description : ATP synthase subunit H

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 146

Average sequence length: 64.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05493	B7XQH2_ENTBH_1_49	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05493	F0VR84_NEOCA_4_81	99.3

Sequence based PCA Plot of the family - PF05493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=11
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay