3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05491

Details:

PFam ID : PF05491

PFam Domain Description : Holliday junction DNA helicase ruvB C-terminus

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 834

Average sequence length: 75.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05491	RUVB_MYCS5_237_312	30.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05491	RUVB_MYCS5_237_312	100

Sequence based PCA Plot of the family - PF05491 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=41 Length=11
Motif3 Start=1 Length=14
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay