3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05485

Details:

PFam ID : PF05485

PFam Domain Description : THAP domain

Number of Sequence in 50% Dataset : 390

Number of Sequence in Full Dataset : 752

Average sequence length: 82.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05485	C6HVC2_9BACT_18_67	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05485	B7PBW6_IXOSC_5_118	100

Sequence based PCA Plot of the family - PF05485 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=21
Motif2 Start=64 Length=8
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay