3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05484

Details:

PFam ID : PF05484

PFam Domain Description : LRV protein FeS4 cluster

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 41

Average sequence length: 54.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05484	C6HVC2_9BACT_18_67	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05484	C6HVC2_9BACT_18_67	100

Sequence based PCA Plot of the family - PF05484 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay